Natural Resources Defense Council Inc v. New Jersey Department of Environmental Protection
CourtCourt of Appeals for the Third Circuit
Date FiledSeptember 8, 2026
Docket26-1252
StatusPublished
📰 News Coverage: Read the LAWS.com news report on this case
Full Opinion
PRECEDENTIAL
UNITED STATES COURT OF APPEALS
FOR THE THIRD CIRCUIT
________________
No. 26-1252
________________
NATURAL RESOURCES DEFENSE COUNCIL, INC.,
Petitioner
v.
NEW JERSEY DEPARTMENT OF ENVIRONMENTAL
PROTECTION
TRANSCONTINENTAL GAS PIPE LINE CO., LLC,
Intervenor Respondent
_________________
No. 26-1253
__________________
NY/NJ BAYKEEPER; PRINCETON MANOR
HOMEOWNERS ASS’N; CENTRAL JERSEY SAFE
ENERGY COALITION; FOOD & WATER WATCH; NEW
JERSEY LEAGUE OF CONSERVATION VOTERS
EDUCATION FUND; SIERRA CLUB,
Petitioners
v.
NEW JERSEY DEPARTMENT OF ENVIRONMENTAL
PROTECTION
TRANSCONTINENTAL GAS PIPE LINE CO., LLC,
Intervenor Respondent
________________
Environmental Protection Agency
(Eastern District of Pennsylvania 0000-25-012.1 LUP250001)
________________
Argued on July 8, 2026
Before: KRAUSE, FREEMAN and ROTH, Circuit Judges
(Opinion filed: September 8, 2026)
2
Jackson P. Garrity (Argued)
Natural Resources Defense Council
20 N Wacker Drive
Suite 1600
Chicago, IL 60606
Mark A. Izeman
Natural Resources Defense Council
40 W. 20th Street
New York, NY 10011
Jared E. Knicley
Natural Resources Defense Council
1152 15th Street NW
Suite 300
Washington, DC 20005
Counsel for Petitioner Natural Resources
Defense Council
Kaitlin Morrison (Argued)
Christopher D. Miller
Eastern Environmental Law Center
One Gateway Center
Suite 2600
Newark, NJ 07102
Counsel for Petitioners NY/NJ
Baykeeper, Princeton Manor
Homeowners Association, Central Jersey
Safe Energy Coalition, Food & Water
Watch, New Jersey League of
Conservation Voters Education Fund,
and Sierra Club
3
Nathaniel F. Rubin (Argued)
Kristina L. Miles
Sara N. Torres
Jordan Viana
Office of Attorney General of New Jersey
25 Market Street
Richard J. Hughes Justice Complex
Trenton, NJ 08625
Counsel for Respondent
Richard G. Scott (Argued)
Christine A. Roy
Rutter & Roy, LLP
2052 Route 35
Suite 103
Wall, NJ 07719
Counsel for Intervenor Respondent
David R. Kott
McCarter & English
100 Mulberry Street
Four Gateway Center
Newark, NJ 07102
Counsel for Amicus Respondent New
Jersey Business & Industry Association
Clifford M. Naeve
Skadden Arps Slate Meagher & Flom
4
1440 New York Avenue NW
Washington, DC 20005
Counsel for Amicus Respondents
Interstate Natural Gas Association of
America and American Petroleum
Institute
________________
OPINION OF THE COURT
________________
ROTH, Circuit Judge
In these consolidated petitions, several environmental
organizations challenge a Water Quality Certification issued
by the New Jersey Department of Environmental Protection
(NJDEP) to Transcontinental Gas Pipe Line Company, LLC
(Transco) for its proposed Northeast Supply Enhancement
Project (NESE). The project would expand Transco’s existing
interstate natural gas pipeline system, in part by constructing a
new pipeline segment beneath the Raritan Bay. Where the new
segment crosses New Jersey waters, its installation would
require dredging the bay floor, stirring up sediment containing
toxic contaminants. The environmental groups contend that
NJDEP arbitrarily reversed its earlier denial of certification,
certified the project before resolving essential monitoring
requirements and corrective measures, failed to explain why it
concluded the project will comply with New Jersey’s water
quality standards, and denied the public an adequate
opportunity to comment. For the reasons that follow, we will
5
grant the petitions, vacate the Water Quality Certification, and
remand to NJDEP for further proceedings.
A. Regulatory Background
Transco’s proposed pipeline extension is subject to both
federal and state permitting requirements. Pursuant to the
Natural Gas Act of 1938, the Federal Energy Regulatory
Commission (FERC) has exclusive authority to approve the
construction and operation of interstate natural gas facilities.1
No company may construct or extend facilities for the
interstate transportation of natural gas without first obtaining a
Certificate of Public Convenience and Necessity from FERC.2
As a condition of FERC approval, an applicant must also
secure any additional state or federal approvals required by
law, including a Water Quality Certification under § 401 of the
Clean Water Act.3
Section 401 of the Clean Water Act requires an
applicant seeking a federal license or permit for an activity
1
15 U.S.C. § 717f; Delaware Riverkeeper Network v. Sec’y
Pa. Dep’t of Env’t Prot. (Riverkeeper I), 833 F.3d 360, 388 (3d
Cir. 2016).
2
15 U.S.C. § 717f(c), (e). Before issuing a Certificate, FERC
must find that the proposed facilities are “required by the
present or future public convenience and necessity” and must
assess the project’s environmental effects under the National
Environmental Policy Act. Id. §§ 717f(e), 717n(b)(1); see 42
U.S.C. § 4321.
3
33 U.S.C. § 1341; Delaware Riverkeeper Network v. Sec’y of
Pa. Dep’t of Env’t Prot. (Riverkeeper II), 870 F.3d 171, 174
(3d Cir. 2017).
6
“which may result in any discharge into the navigable waters”
of the United States to obtain a Water Quality Certification
“from the State in which the discharge originates or will
originate.”4 The certifying state agency must determine that
the discharge “will comply” with the applicable provisions of
the Clean Water Act and state water quality standards.5 Any
certification must also “set forth any effluent limitations and
other limitations, and monitoring requirements necessary to
assure” that compliance.6
NJDEP issues Water Quality Certifications in New
7
Jersey and administers the State’s water quality regulations,
including those governing new dredging for submerged
pipelines (the New Dredging Rule)8 and the Surface Water
Quality Standards.9 The New Dredging Rule requires
dredging-related turbidity—that is, water cloudiness caused by
suspended particles—and other water quality parameters to
meet the Surface Water Quality Standards.10 The New
Dredging Rule also authorizes NJDEP to require a permittee to
conduct water quality monitoring, and provides that NJDEP
“will work cooperatively with the applicant to fashion
acceptable control measures” when modeling predicts an
exceedance of the Surface Water Quality Standards or
sediment testing reveals significant contamination.11
4
33 U.S.C. § 1341(a)(1).
5
Id.
6
Id. § 1341(d); see PUD No. 1 of Jefferson Cnty. v. Washington
Dep’t of Ecology, 511 U.S. 700, 711–13 (1994).
7
See N.J. Admin. Code § 7:7A–2.1(a), (d).
8
Id. § 7:7–12.7.
9
Id. §§ 7:9B–1.1 to –1.16.
10
Id. § 7:7–12.7(c)(10)(iii).
11
Id. § 7:7–12.7(c)(10)(iii)–(iv).
7
The applicable Surface Water Quality Standards depend
on the designated use of the waterbody at issue.12 The Raritan
Bay waters crossed by the proposed pipeline are classified as
saline estuarine (SE1) and saline coastal (SC) waters,13 with
designated uses that include shellfish harvesting, preservation
of the existing ecosystem, and primary contact recreation.14
The water quality standards protect those uses through
narrative and numeric criteria for turbidity, suspended solids,
and toxic substances.15 For example, in saline waters, the
standards prohibit toxic substances at concentrations harmful
to humans or aquatic life and set a human-health criterion of
.00022 micrograms per liter for 4,4’–DDE (a breakdown
product of the pesticide DDT).16 All state surface waters are
subject to New Jersey’s “antidegradation” policy, which
directs that a waterbody’s “[e]xisting uses shall be maintained
and protected.”17
B. NJDEP’s Review of NESE
1. The 2019 Denial
In March 2017, Transco applied to FERC for a
Certificate of Public Convenience and Necessity for NESE,
which would expand Transco’s existing interstate natural gas
pipeline system to carry additional gas from Pennsylvania to
12
See id. § 7:9B–1.15.
13
Id. § 7:9B–1.15(c), (h).
14
Id. § 7:9B–1.12(d), (g).
15
Id. § 7:9B–1.14(d), (f).
16
Id. § 7:9B–1.14(d)(12), (f)(7).
17
Id. § 7:9B–1.5(d)(1).
8
New York through New Jersey. The New Jersey portion of the
project includes the construction of a new compressor station
in Franklin Township,18 an onshore pipeline segment known as
the Madison Loop, and the Raritan Bay Loop, a pipeline
segment that will require approximately six miles of offshore
construction in New Jersey waters.19 The underwater portions
of the Raritan Bay Loop will require Transco to dredge a
trench, install the pipeline, and then backfill the trench,
disturbing seabed sediment along the way.
Transco applied for a New Jersey Water Quality
Certification in June 2018.20 Over the next year, NJDEP
flagged deficiencies in the application and Transco responded
with supplemental filings.
On June 5, 2019, NJDEP denied Transco’s NESE
application without prejudice. The denial rested on several
grounds, including detrimental impacts on freshwater wetlands
near the new compressor station, Transco’s failure to
demonstrate the “compelling public need” for the pipeline
expansion as required by New Jersey’s Freshwater Wetlands
Protection Act,21 and insufficient information to determine
18
A compressor station is a facility that “increase[s] the
pressure and rate of flow” in a pipeline so that gas can continue
moving through the system. See Riverkeeper I, 833 F.3d at
369.
19
A loop is a “section[] of pipe connected to the main pipeline
system that reduce[s] the loss of gas pressure and increase[s]
the flow efficiency of the system.” Id.
20
Transco had voluntarily withdrawn an earlier application
filed in July 2017.
21
N.J. Stat. Ann. §§ 13:9B–1 to –30.
9
whether the Raritan Bay Loop would comply with state water
quality standards.22 As to water quality, NJDEP identified
sediment samples from the Raritan Bay route that exceeded
screening benchmarks for several substances, including
arsenic, manganese, mercury, polychlorinated biphenyls
(PCBs), and 4,4’–DDE. Those benchmarks indicated an
increased likelihood of “adverse effects to benthic
communities,” or organisms that live on or near the bottom of
the ocean.23
Because the samples and proposed dredging plans
“indicate[d] there could be potential impact to water quality,”
and “Transco did not provide modeling to show that turbidity
concentrations and water quality parameters for the identified
chemicals of concern downstream and upstream of the
dredging site will meet the [Surface Water Quality
Standards],” NJDEP concluded that “Transco ha[d] not
sufficiently demonstrated how it would avoid adverse impacts
to surface water quality.”24 The denial letter informed Transco
that “[a]ny resubmittal of [the] NESE Project application must
include a modeling analysis for the above referenced
parameters that demonstrates compliance with the [Surface
Water Quality Standards], through the implementation of
appropriate best management practices . . ., to avoid adverse
water quality impacts.”25
22
JA 106–14.
23
Id. at 112.
24
Id. at 114.
25
Id.
10
2. The 2020 Denial
A week later, on June 12, 2019, Transco filed a new
application. On June 25, NJDEP issued a technical-deficiency
letter requesting, among other things, a modeling analysis for
the contaminants NJDEP had identified in its 2019 denial as
exceeding screening benchmarks. A few days later, Transco
submitted a contaminant modeling report titled NESE
Contaminant Transport Modeling Results for New Jersey
Waters (the Contaminant Report). The report predicted
contaminant concentrations 500 feet from dredging under
different operating conditions, including reduced dredging
rates and pauses during slack tide, when tidal currents are
weakest. The modeled operating conditions, Transco averred,
would avoid exceedances of the Surface Water Quality
Standards.
In November 2019, Transco voluntarily withdrew its
application.26 Following the withdrawal, NJDEP sent Transco
a letter identifying additional information that any future
submission would need to include. Although NJDEP
acknowledged receipt of the Contaminant Report, it
determined that Transco still “did not provide any information
as to the means of monitoring the proposed dredging . . . to
ensure that [best management practices] and operational
procedures would be properly implemented to comply with
[the] Surface Water Quality Standards.”27 NJDEP further
26
Transco had previously withdrawn and resubmitted permit
materials to afford NJDEP more time for review. The record
does not indicate whether the November 2019 withdrawal
served the same purpose.
27
Id. at 743.
11
explained that Transco had not identified adaptive
management procedures—preplanned construction
adjustments in response to monitoring results—that could be
implemented if dredging exceeded those standards.
In January 2020, Transco resubmitted its application
with a draft Water Quality Monitoring Plan that included
proposed adaptive management measures. In May 2020, New
York denied Transco’s corresponding Water Quality
Certification for the New York portion of NESE. NJDEP
consequently denied Transco’s New Jersey application the
same day, explaining that without a functional endpoint in New
York, Transco had not demonstrated the compelling public
need required by New Jersey’s wetlands rules. NJDEP
expressly stated that it “need not resolve any further issues”
raised by the application.28
3. The 2025 Certification
In May 2025, Transco again applied to New Jersey for
a Water Quality Certification and other necessary state permits
for NESE. Transco described the project’s scope as unchanged
and its application as “essentially identical to the application[]
reviewed by [NJDEP] in 2020,” except for revisions
necessitated by intervening changes to New Jersey’s
stormwater regulations.29 The application incorporated the
Contaminant Report and the Water Quality Monitoring Plan
developed after the 2019 denial.
28
Id. at 124.
29
Id. at 564.
12
NJDEP deemed the application administratively
complete on June 23, 2025, and opened a public comment
period from July 16 to September 25, 2025. NJDEP posted
Transco’s application materials on its website and held a public
hearing in early September. Commenters raised several
substantive concerns about NESE. They asserted that
Transco’s 2025 application was “nearly identical” to its 2020
application;30 that its modeling still showed potential
exceedances of limits governing toxic pollutants; that the
Water Quality Monitoring Plan tracked only turbidity, not
toxic substances; and that the proposed monitoring locations
were too far from dredging to assess compliance with the
Surface Water Quality Standards.
While the public comment period remained open,
NJDEP requested revisions to Transco’s stormwater materials
for the new compressor station site. When Transco submitted
a revised stormwater report in August, NJDEP did not post the
revised report to its project website.
NJDEP’s review of Transco’s application continued
after the public comment period closed. On October 30,
NJDEP sought clarification on several aspects of the Water
Quality Monitoring Plan, including the threshold for triggering
corrective measures in response to increased turbidity, the
number and placement of monitoring locations, the data
Transco would provide to NJDEP, the deadline for reporting
exceedances, and whether operations would cease if corrective
measures failed.
30
Id. at 242.
13
Eight days later, on November 7, 2025, New York
issued its certification for NESE.31 Later that same day,
NJDEP issued the Water Quality Certification now before us.
Two conditions in the Water Quality Certification are
especially pertinent for our purposes. First, Transco must
submit a Water Quality Monitoring Plan “for review within 60
days of issuance of [the certification].”32 NJDEP directed that
the plan must include “one monitoring location within the
operation,” two “outside of the operation,” and a “control
point” to measure background conditions.33 The monitoring
locations “should be calculated based on the modeling analysis
for the rate of operation,” and Transco must conduct
continuous visual observations, record turbidity twice daily,
31
That certification, which was recently upheld by the U.S.
Court of Appeals for the Second Circuit, see Raritan
Baykeeper, Inc. v. N.Y. State Dep’t of Env’t Conservation, No.
25-2938, 2026 WL 2453538 (2d Cir. Aug. 21, 2026) (summary
order), rests on a materially different state administrative
record than the one before us. For example, the Water Quality
Certification (WQC) issued by the New York State
Department of Environmental Conservation (NYSDEC)
“require[d] NYSDEC to review and approve” the majority of
Transco’s compliance plans before construction
commenced, provided for an “independent third-party monitor
with stop-work authority,” and set out toxicity limits for
roughly a dozen pollutants in the certification itself. Id. at 13-
15. As explained below, see infra Part III.B, the New Jersey
certification before us lacks these safeguards and leaves
mitigation response largely to Transco’s discretion.
32
JA 16.
33
Id.
14
and make monitoring data available to NJDEP within twenty-
four hours of collection.34
Second, Transco must submit an Adaptive Management
Plan containing “a course of action, some or all of which may
be employed in any given situation” to “reduce or mitigate the
effects of observed increases in turbidity.”35
The Water Quality Certification also imposes several
dredging-related restrictions. For instance, Transco must use
closed clamshell dredging buckets designed to limit sediment
dispersion, reduce the dredging rate in the portion of the route
with the highest predicted contaminant concentrations, conduct
dredging during slack tide in that same area, and follow
specific restrictions on refilling the trench and disposing of
dredged sediment.
Accompanying the Water Quality Certification were
engineering, environmental, dredging, and threatened and
endangered species reports created by NJDEP, as well as the
agency’s response to public comments. In response to
commenters’ water quality concerns, NJDEP stated that, based
on Transco’s modeling, and through the use of best
management practices and monitoring, “any temporary
increases in turbidity or contaminant levels are expected to be
minimal and will not result in long-term impacts to water
quality or aquatic life.”36
34
Id.
35
Id. at 17.
36
Id. at 425.
15
C. Procedural History
On November 18, 2025, Petitioner Natural Resources
Defense Council (NRDC) filed a petition for review in the
United States Court of Appeals for the Second Circuit
challenging New Jersey’s Water Quality Certification for
NESE. That same day, New York/New Jersey Baykeeper,
together with Princeton Manor Homeowners Association,
Central Jersey Safe Energy Coalition, Food & Water Watch,
New Jersey League of Conservation Voters Education Fund,
and the Sierra Club (collectively, the Baykeeper Petitioners),
filed a separate petition in the same court challenging the same
certification. Transco intervened as a respondent in both
matters. The Second Circuit Court of Appeals transferred the
petitions to this Court, and we consolidated them. The New
Jersey Business & Industry Association filed an amicus brief
in support of Transco.
II.
Pursuant to the Natural Gas Act, we have “original and
exclusive” jurisdiction to review state administrative agency
16
grants of water quality certifications under § 401 of the Clean
Water Act.37
“[W]e review de novo state agency interpretation of
federal law, and review under the arbitrary and capricious
standard state action taken pursuant to federal law.”38 Under
federal law, agency action is arbitrary and capricious when it
“fails to examine the relevant data and articulate a satisfactory
explanation for its action[,] including a rational connection
37
15 U.S.C. § 717r(d)(1); Riverkeeper I, 833 F.3d at 370–73.
While neither NJDEP nor Transco contest Petitioners’ Article
III standing, we have an independent duty to ensure that we
have jurisdiction to hear these petitions. See Free Speech
Coal., Inc. v. Att’y Gen., 974 F.3d 408, 421 (3d Cir. 2020)
(explaining “associational standing requires an association to
show that (1) its members would otherwise have standing to
sue in their own right, (2) the interests it seeks to protect are
germane to the organization’s purpose, and (3) neither the
claim asserted nor the relief requested requires the
participation of individual members in the lawsuit”) (cleaned
up). Petitioners submitted declarations from members who
regularly use Raritan Bay and nearby waters for recreation and
aesthetic enjoyment and who describe concerns that dredging-
related pollution will impair those uses. Their alleged injuries
are fairly traceable to the challenged certification and would be
redressed by vacatur. See Friends of the Earth, Inc. v. Laidlaw
Env’t Servs. (TOC), Inc., 528 U.S. 167, 180–85 (2000).
Accordingly, we find the Petitioners have standing. See id.
38
Riverkeeper I, 833 F.3d at 377.
17
between the facts found and the choice made.”39 Although a
reviewing court will “uphold a decision of less than ideal
clarity if the agency’s path may reasonably be discerned,” it
“may not supply a reasoned basis for the agency’s action that
the agency itself has not given.”40 Even so, “we apply a
‘harmless error’ analysis,” meaning that “mistakes that have no
bearing on the substantive decision of an agency do not
prejudice a party.”41
When a state agency interprets state law, we afford its
interpretation the same level of deference it would receive
under state law.42 Under New Jersey law, an agency charged
with administering a statutory scheme is ordinarily entitled to
substantial deference in construing statutes and regulations
within its area of authority.43
III.
Petitioners challenge the Water Quality Certification on
four principal grounds. They argue that NJDEP (1) arbitrarily
reversed its 2019 certification denial, (2) unlawfully deferred
material monitoring and adaptive management requirements,
39
Id. (quoting Motor Vehicle Manfs. Ass’n v. State Farm
Mutual Automobile Ins. Co., 463 U.S. 29, 43 (1983)) (cleaned
up).
40
State Farm, 463 U.S. at 43 (citations omitted).
41
Riverkeeper I, 833 F.3d at 377 (citation omitted).
42
See Riverkeeper II, 870 F.3d at 181; Twp. of Bordentown v.
FERC, 903 F.3d 234, 270 (3d Cir. 2018).
43
See E. Bay Drywall, LLC v. Dep’t of Lab. and Workforce
Dev., 278 A.3d 783, 792 (N.J. 2022) (citing Hargrove v.
Sleepy’s, LLC, 106 A.3d 449, 456 (N.J. 2015)).
18
(3) inadequately explained how the project complies with New
Jersey’s water quality standards, and (4) deprived the public of
a meaningful opportunity to comment. We reject the first
argument, but we agree that NJDEP improperly left material
monitoring and adaptive management terms for later resolution
without making NJDEP approval of the final plans a
prerequisite to dredging. We also conclude that NJDEP failed
to adequately explain its finding that NESE will meet state
water quality criteria. Because those defects require vacatur,
we need not decide the public participation claims.
A. The Alleged Reversal
We begin with NRDC’s contention that NJDEP
arbitrarily reversed its 2019 certification denial. NRDC argues
that NJDEP arbitrarily reversed course by approving Transco’s
2025 application after denying certification in 2019 based on
water quality concerns, without acknowledging or explaining
its change in position.44 NRDC’s argument, however,
overlooks the different evidentiary records underlying the two
decisions.
44
The parties dispute whether F.C.C. v. Fox Television
Stations, Inc. and related cases—which require agencies to
acknowledge and explain certain changes in policy or agency
practice—apply to successive permit decisions like those at
issue here. See, e.g., 556 U.S. 502 (2009); Logic Tech. Dev.
LLC v. FDA, 84 F.4th 537 (3d Cir. 2023). We need not wade
into that debate because NRDC’s argument rests on the
premise that the application NJDEP approved in 2025 did not
materially differ from the one it denied in 2019. As explained
below, we disagree.
19
NJDEP’s 2019 denial did not state that NESE could
never comply with New Jersey’s water quality standards.
Rather, NJDEP concluded that Transco had not yet
demonstrated compliance—a conclusion borne of a lack of
data. The agency observed that Transco had “not sufficiently
demonstrated how it would avoid adverse impacts to surface
water quality,” and directed that any renewed application
include “a modeling analysis . . . that demonstrates compliance
with the [Surface Water Quality Standards],” as well as
appropriate best management practices or other controls.45
Transco responded by submitting the Contaminant
Report, which modeled predicted contaminant concentrations
under various dredging scenarios, including reduced dredging
rates and slack-tide restrictions. Transco also later developed
and submitted a Water Quality Monitoring Plan in response to
NJDEP’s ongoing concerns about monitoring and adaptive
management. During its 2020 review, NJDEP did not reject
those supplemental materials; instead, NJDEP denied
Transco’s application solely because New York had rejected
Transco’s corresponding NESE application.
NRDC seizes on Transco’s statement in its 2025 cover
letter that its application was “essentially identical” to the one
NJDEP reviewed in 2020, offering the statement as further
evidence that the application had not materially changed since
NJDEP’s 2019 water quality finding.46 Transco’s choice of
words proves less than NRDC supposes. By 2020, NJDEP had
before it the additional contaminant modeling and technical
materials Transco had developed to address the agency’s water
45
JA 114.
46
Id. at 564.
20
quality concerns. And, as noted, NJDEP’s denial that year did
not reach those materials on the merits. We accordingly
conclude that NJDEP’s approval of a materially different
application in 2025 does not amount to the arbitrary reversal
NRDC alleges.
B. Deferred Monitoring and Adaptive Management
Terms
Petitioners next argue that NJDEP acted arbitrarily and
capriciously when it issued the Water Quality Certification
before Transco finalized its Water Quality Monitoring Plan
and Adaptive Management Plan. They contend that § 401 of
the Clean Water Act required NJDEP to determine, before
certification, that NESE would comply with New Jersey’s
water quality standards, yet the Water Quality Certification
deferred critical monitoring and corrective measures for later
resolution. NJDEP and Transco answer that § 401 allows
conditional certifications, that the Water Quality Certification
imposes enforceable monitoring and response obligations, and
that NJDEP retained authority to review and approve the post-
certification plans.
Section 401 requires the certifying state agency to
certify that the discharge from the proposed activity “will
comply” with the applicable provisions of the Clean Water
Act, including applicable federal and state water quality
standards.47 The certification itself must “set forth” any
limitations and monitoring requirements “necessary to assure”
47
33 U.S.C. § 1341(a)(1).
21
such compliance, and those requirements “shall become a
condition on any Federal license or permit.”48
NJDEP principally relies on our decision in Delaware
Riverkeeper Network v. Secretary Pennsylvania Department of
Environmental Protection (Riverkeeper I).49 In Riverkeeper I,
the Pennsylvania Department of Environmental Protection
(PADEP) issued a § 401 Water Quality Certification before
completing an environmental assessment required for a
separate state permit.50 We upheld the certification, finding
PADEP’s order of operations permissible, because
construction could not begin until the agency reviewed the
assessment and issued the separate permit.51 In other words,
although PADEP had deferred review, it did not abandon it.
We rejected a similar sequencing argument in Delaware
Riverkeeper Network v. Secretary Pennsylvania Department of
Environmental Protection (Riverkeeper III).52 There, PADEP
certified water quality compliance based on Transco’s pledge
to demonstrate substantive compliance in later permit
applications, rather than in the Water Quality Certification
application itself.53 Like Riverkeeper I, construction remained
contingent on subsequent agency approval before work could
begin.54 So, we upheld the Water Quality Certification.55
48
Id. § 1341(d); PUD No. 1, 511 U.S. at 712–13.
49
833 F.3d at 367.
50
Id. at 385–88.
51
Id. at 385–86.
52
903 F.3d 65 (3d Cir. 2018).
53
Id. at 76–77.
54
See id.
55
See id. at 78.
22
Petitioners instead direct us to Waterkeeper Alliance,
Inc. v. EPA.56 In Waterkeeper, the Second Circuit Court of
Appeals examined an EPA rule governing discharge permits
for concentrated animal feeding operations, or large livestock
farms.57 The rule required each operation to develop a nutrient
management plan but did not require the permitting
authority—whether the EPA or an authorized state agency—to
review that plan before issuing a permit.58 Our sister circuit
invalidated the rule, determining the Clean Water Act allows
permit issuance only when the permitting authority determines
that the proposed discharge will comply with applicable
pollution limits and standards.59 Thus, the permitting authority
had to determine whether each nutrient management plan
satisfied the rule’s substantive requirements before issuing a
permit.60 Without that review, the rule did “nothing to ensure”
that each operation had developed a compliant plan and instead
created an “impermissible self-regulatory permitting
regime.”61
56
399 F.3d 486 (2d Cir. 2005).
57
Id. at 498–99.
58
Id.
59
Id. at 502.
60
See id. at 499–502.
61
Id. at 498–99. Waterkeeper also held that the terms of the
nutrient management plans were themselves “effluent
limitations,” meaning restrictions on pollutant discharges, and
therefore had to appear in the discharge permits. Id. at 502.
But NRDC does not contend that the monitoring and adaptive
management requirements left for later resolution are effluent
limits, so Waterkeeper’s alternative basis for invalidating the
EPA rule is inapposite here.
23
This case falls somewhere between our line of
Riverkeeper cases and Waterkeeper. NJDEP has not, as in
Waterkeeper, left Transco to write the terms of its own
compliance. The Water Quality Certification at issue here
imposes several concrete restrictions on dredging: it prescribes
dredging practices designed to limit sediment dispersion,
requires turbidity monitoring, and instructs Transco to finalize
both a Water Quality Monitoring Plan and an Adaptive
Management Plan. But Riverkeeper I and Riverkeeper III
support NJDEP only if, like PADEP, NJDEP retained authority
to approve the outstanding material plans before dredging
could begin. The certification’s text shows otherwise.
Take Condition 9, which requires Transco to submit the
Water Quality Monitoring Plan “for review within 60 days of
issuance of [the] permit.”62 The text obligates “review,” not
“approval,” and says nothing about approval before dredging
can begin.63 Even assuming “review” implies that NJDEP has
the authority to accept or reject the plan, Condition 11 is barer
still when it comes to what must happen and when.
Condition 11 requires Transco to submit an Adaptive
Management Plan “consist[ing] of a course of action, some or
all of which may be employed in any given situation,” but sets
no deadline for submission and does not condition certification
62
JA 16.
63
Id. Compare Merriam-Webster’s Collegiate Dictionary
1360 (12th ed. 2025) (defining “review” as “an act or process
of carefully looking at or examining the quality, condition, etc.,
of something or someone”) with id. at 86 (defining “approve”
as “to accept as satisfactory” or “to give formal or official
sanction to”).
24
on NJDEP’s approval of said plan.64 And by providing that
“some or all” measures “may be employed,” Condition 11 does
not even require Transco to abide by any specified action when
turbidity increases.65
Nor does Condition 6 salvage the Water Quality
Certification. It requires Transco, before dredging, to obtain
“[a]ll required local, state and federal approvals for the
work.”66 Read in context, that general catchall refers to permits
and other governmental authorizations required for the work,
not to the individual plans Transco must submit under this
certification. In any event, Condition 6 does not identify
approval of either plan as one of the “required” approvals, and
nothing in the certification guarantees that either plan will be
reviewed as part of a later permit before dredging, nor have
Respondents argued so.
NJDEP points to Transco’s representation that it would
“adhere to an NJDEP–approved” monitoring plan as evidence
that the agency retained approval authority.67 That
representation, however, is buried in the May 2025
Environmental Report that Transco submitted with its
application. It appears nowhere in the Water Quality
Certification’s enforceable conditions. A regulated party’s
representation in its application does not amount to an
enforceable condition precedent to construction.
64
JA 17.
65
Id. (emphasis added).
66
Id. at 16.
67
Id. at 612; NJDEP Br. 37.
25
Elsewhere, by contrast, the Water Quality Certification
expressly requires NJDEP approval before specified work may
proceed. For example, Condition 15 provides that “[p]rior to
backfilling the trenches,” Transco “shall receive an approval
from [NJDEP] and [the] Army Corps of Engineers.”68
Condition 21 likewise directs Transco to submit the dredging
inspector’s resume “to [NJDEP] for review and receive written
approval prior to the initiation of dredging.”69 The omission of
comparable language in Conditions 9 and 11 is therefore stark.
The Water Quality Monitoring and Adaptive
Management Plans were plainly critical to NJDEP’s
conclusion that NESE would comply with New Jersey’s water
quality standards. NJDEP denied certification in 2019 in part
because Transco had not shown that dredging would avoid
adverse water quality impacts. And in 2025, NJDEP expressly
relied on “modeling, monitoring, and [best management
practices]” to conclude that “any temporary increases in
turbidity or contaminant levels” would be minimal.70
Yet only eight days before certification, NJDEP
recognized that material aspects of the Water Quality
Monitoring and Adaptive Management Plans remained
unsettled. It pressed Transco to clarify the turbidity threshold
that would trigger mitigation measures, the timeframe for
reporting an exceedance, and whether dredging would stop if
corrective measures failed. While the Water Quality
Certification ultimately addresses some water quality
requirements—including sampling locations, monitoring
68
JA 17.
69
Id.
70
Id. at 425.
26
frequency, and data reporting—it failed to resolve several of
the substantive questions NJDEP itself had flagged. The
certification essentially deferred the core of the adaptive
management scheme to later plans that are no longer subject to
NJDEP’s approval before dredging begins. Thus, compared to
Riverkeeper I and Riverkeeper III, a key safeguard is missing:
no prescribed NJDEP approval stands between the unfinished
plans and dredging.71
Ultimately, our review turns on the certification that
NJDEP issued, not the certification the agency now
describes.72 To be clear, we do not suggest that § 401
categorically forbids an agency from requiring monitoring or
adaptive management plans after certification. Nor do we
conclude that every monitoring threshold or corrective
measure must appear on the face of the certification. We
recognize that some implementation details will necessarily
require refinement as work progresses and field conditions
change. Nevertheless, there is a critical distinction between
refining details under a mandatory approval process and
leaving material compliance terms to plans that the agency
71
See also Riverkeeper I, 833 F.3d at 385–87 (upholding
certification because construction remained contingent on
PADEP’s later substantive review and approval); Riverkeeper
III, 903 F.3d at 76–77 (same).
72
See State Farm, 463 U.S. at 50 (“[C]ourts may not accept
appellate counsel’s post hoc rationalizations for agency
action.”); SEC v. Chenery Corp., 332 U.S. 194, 196 (1947)
(establishing that “a reviewing court, in dealing with a
determination or judgment which an administrative agency
alone is authorized to make, must judge the propriety of such
action solely by the grounds invoked by the agency”).
27
need not approve before work begins.73 Because material
monitoring and response terms remained unresolved and no
later NJDEP approval was required before dredging could
begin, we conclude that NJDEP acted arbitrarily and
capriciously in issuing the Water Quality Certification.74
C. NJDEP’s Explanation of Compliance
The Water Quality Certification is deficient in another
respect. Even apart from the deferred plans, NJDEP’s
decisional documents do not adequately explain its conclusion
that Transco’s dredging will comply with New Jersey’s water
quality standards. Three points in the record reveal that
NJDEP’s conclusion outruns its explanation: its treatment of
the 500-foot modeling boundary and predicted 4,4’–DDE
concentrations, its reliance on turbidity monitoring, and its
73
Compare Sierra Club v. EPA, 972 F.3d 290, 307–08 (3d Cir.
2020) (vacating EPA app